Gall-ID

Identify strains isolated from Agrobacterium or Rhodococcus-induced galls using MLSA and other methods.

Agrobacterium crown gall

Identify Agrobacterium isolates using MLSA or whole genome sequences.

Rhodococcus leafy gall

Identify Rhodococcus isolates using MLSA or whole genome sequences.

Vir-Search

Search for known virulence genes in whole genome sequencing data.

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Agro-type

Identify Agrobacterium strains with MLSA or 16S data

Identify my strain

Rhodo-type

Identify Rhodococcus strains with MLSA or 16S data

Identify my strain

Panto-type

Identify Pantoea agglomerans strains with MLSA data

Identify my strain

Pseudo-type

Identify Pseudomonas savastanoi strains with MLSA data

Identify my strain

Phytopath-type

Identify other bacterial phytopathogens using 16S or MLSA data

Identify my strain

WGS Pipeline

Generate a phylogeny with whole genome sequence data

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Auto ANI

Calculate average nucleotide identity between genomes

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Vir-Search

Use whole genome sequencing data to identify virulence genes

Identify genes

Gall Pathogen Isolate Identification

Use this website to identify bacterial isolates from plant galls. Multi-locus sequence analysis (MLSA) data for Agrobacterium and/or Rhodocccus isolates can be used to identify your strain of interest. A software pipeline and instructions for the analysis of whole genome sequencing data is also available. You can also search for known Agrobacterium or Rhodocccus virulence genes in uploaded whole genome sequencing data.