Vir-Search

Search for virulence genes in whole genome sequencing read data.

Virulence Gene Search

Select your organism of interest, whether you have paired- or single-end reads, and drop your sequencing read files onto the target. Your read files will be uploaded and then analyzed using Short Read Sequence Typing (SRST2, ref) to identify known virulence genes. There is currently a 4 GB total file size upload limit in place, which may be raised in the future. You may subsample your reads to an acceptable file size before submitting by following the procedure described here.


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Enter your email to have results sent to you upon completion. Analysis typically takes 10-20 minutes. Please do not submit more than one job at a time. Abuse of this service will result in access becoming limited.